Basic Information
VIS ID
TVIS44025437
Fusion event
HTLV-1-SLC25A48 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
135052282/135716593 (Hg38)
End
135052282/135716593 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
SLC25A48
Nearest miRNA
hsa-mir-10397/Upstream/1490741; hsa-mir-103a-1/Downstream/86392;
Nearest TSS
ENST00000502646/Upstream/62658; ENST00000462340/Downstream/118056;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/137415, chr5-CpG: 70/Downstream/117989
Nearby gene
LINC01959(-62658) ;
Upstream sequence
AGGGACCAGACATTCTCTGCTCTCACTGCGGATCATTTCCTGCACCTTAGTGTGAATGAGTTTGCCTCTTCTCCACCTCCCTTAGTAGATGTCTGGCCTT
Downstream sequence
GTTTCCTCTTCAAGAGGTTTCAGGCATCTGTCAGCCAGTATCAGGTAAAGAAAGGACTCTTGTCCAACAAGGAGTCTTCCAAATAAAAAGGCAGTCCCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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