Basic Information
VIS ID
TVIS44025439
Fusion event
HTLV-1-SPOCK1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
136327609/136991920 (Hg38)
End
136327609/136991920 (Hg38)
Orient
-
Location type
Intronic
Target gene
SPOCK1
Nearest miRNA
hsa-mir-10397/Upstream/1188845; hsa-mir-103a-1/Downstream/655652;
Nearest TSS
ENST00000502646/Upstream/3083; ENST00000604680/Downstream/1240;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/634566, chr5-CpG: 134/Downstream/506407
Upstream sequence
CAGCTTATGACAAAACTGAGTATGGTCTCTGCCAACTCAGCACCTGATGCTGGCGGGAGGCTCCTTGAGCAATCTGCATGTTATGGATGGGGAGAGGGGA
Downstream sequence
CACCTGTCTGGGAGTTTCTGTGGAAGACAATATGCAGTCTGACTATtgtacaaaaagacatagcaccaaagatgtttgctacagtgttacttctattagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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