Basic Information
VIS ID
TVIS44025441
Fusion event
HTLV-1-DNAH5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
13822092/13821983 (Hg38)
End
13822092/13821983 (Hg38)
Orient
+
Location type
Intronic
Target gene
DNAH5
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-10397/Upstream/3343838; hsa-mir-103a-1/Downstream/1003946;
Nearest TSS
ENST00000502646/Upstream/11460; ENST00000503244/Downstream/38320;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/11759, chr5-CpG: 48/Downstream/189527
Upstream sequence
tcccaggctcaggtgatcctcctgcctcagctgcatgagtagttgggactatagacatgcaccactgcaccaggctaattttttaatttatttgtagaga
Downstream sequence
cgagttctcgctatgttgctcaggctagcctcaagtaatcccccaacgttggcctatcaaagcactgggactattggcatgagtcaccacccctggccCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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