Basic Information
VIS ID
TVIS44025445
Fusion event
HTLV-1-CXXC5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
End
139036123/139656538 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/2008889; hsa-mir-103a-1/Downstream/907133;
Nearest CpG islands
Nearest cancer related gene
CXXC5(TSG, No orient, 0)
Upstream sequence
GTGCTTACATACACACACATGTGTGCAGAAAGACACCCTCACCCATGAAAACATGCTGGCTTATACCTTCCTTGCAGGCAGGGCCGTGCCTCCTGTCATT
Downstream sequence
GATCCCCTCATTCATCAGATGCTTATTGGGGCTGCTTATTGGGCCTGCTCCTTGCCAGCCTTGCAATGGGATATGGCAGTGattacttcttgtaccccca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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