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TVIS44025448
Basic Information
VIS ID
TVIS44025448
Fusion event
HTLV-1-FGF1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
142007817/142628252 (Hg38)
End
142007817/142628252 (Hg38)
Orient
-
Location type
Intronic
Target gene
FGF1
miRNAs that regulate target gene
hsa-mir-124-3p
;
hsa-mir-7-5p
;
hsa-mir-943
;
hsa-mir-4439
;
hsa-mir-3136-5p
;
hsa-mir-526b-5p
;
hsa-mir-6857-3p
;
hsa-mir-6855-3p
;
hsa-mir-4513
;
hsa-mir-6069
;
hsa-mir-6728-3p
;
hsa-mir-186-3p
;
hsa-mir-6877-3p
;
hsa-mir-6819-3p
;
hsa-mir-7109-3p
;
hsa-mir-4753-3p
;
hsa-mir-302d-5p
;
hsa-mir-302b-5p
;
hsa-mir-130b-5p
;
hsa-mir-589-3p
;
hsa-mir-500b-3p
;
hsa-mir-4773
;
hsa-mir-1912
;
hsa-mir-1295b-5p
;
hsa-mir-326
Nearest miRNA
hsa-mir-10397/Upstream/1980326; hsa-mir-103a-1/Downstream/1051608;
Nearest TSS
ENST00000502646/Upstream/6910;
ENST00000566527/Downstream/15949;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/270837
,
chr5-CpG: 145/Downstream/141782
Upstream sequence
TACTAAGAGATAAGTCTGCCTTGGTATCTAGCATCTTCAGGAAGGTGCACATTGCAGTCAAGATGTCATTTATCAGggctgggcgtggtggctcacacct
Downstream sequence
gtaatcccagcatgttgagaggccgaggcaggcagatcacgaggttgggagtttgagaccagcctgaccaacatgatgaaaccccgtctctactaaaaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HTLV-1 carrier#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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