Basic Information
VIS ID
TVIS44025465
Fusion event
HTLV-1-SAP30L-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
153770631/154391071 (Hg38)
End
153770631/154391071 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
SAP30L-AS1
Nearest miRNA
hsa-mir-10397/Upstream/43824; hsa-mir-103a-1/Downstream/204941;
Nearest TSS
ENST00000502646/Upstream/14754; ENST00000519235/Downstream/11719;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/200093, chr5-CpG: 33/Downstream/14010
Upstream sequence
AGGAAATGAGACAGTGTAATGAGGAGGCTCCTGAGGTCCGGAAGGGAGACTTTTCTCCCTGGGCTTTCTCTCTCCTGGCTTGGAAAAGGAGAGTTTCTGG
Downstream sequence
AGCCAGCAACAGCCCATCTGCCAGTGCACTGTCTCCCAGGACCCTGTGGAAAGACTGCCTGCAGGGCTGAGGGGAACAGGTGAGCCCATTCATCCCTGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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