Basic Information
VIS ID
TVIS44025482
Fusion event
HTLV-1-LOC101929524 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
16627914/16627805 (Hg38)
End
16627914/16627805 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101929524
Nearest miRNA
hsa-mir-10397/Upstream/692545; hsa-mir-103a-1/Downstream/528125;
Nearest TSS
ENST00000502646/Upstream/10580; ENST00000606445/Downstream/85663;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/10486, chr5-CpG: 54/Downstream/73157
Upstream sequence
atcaataatgccccatagcaataagcttatgtaggaaccaggttttggtttctgaatactattgcctgccaaaaagaaccagagctccttagagaattgg
Downstream sequence
caaatactaggtcagagttaggaacatcttgtgtatcagaaagcaaagacgtgttcacagaccatttaaaagtccatgtcaaaaaaatacagaagtcagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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