VISDB Viral Integration Site DataBase

VIS ID

TVIS44025490

Fusion event

HTLV-1-KCNMB1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.1

Reference genome

Start

End

169812436/170385432 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-6075 ; hsa-mir-5095 ; hsa-mir-1292-3p ; hsa-mir-4433a-3p ; hsa-mir-6504-3p ; hsa-mir-4433b-3p ; hsa-mir-4700-3p ; hsa-mir-6715b-3p ; hsa-mir-6832-5p ; hsa-mir-4524a-3p ; hsa-mir-6715a-3p ; hsa-mir-4524b-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-4793-3p ; hsa-mir-6776-5p ; hsa-mir-3130-3p ; hsa-mir-6742-3p ; hsa-mir-7851-3p ; hsa-mir-619-3p ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4529-3p ; hsa-mir-8058 ; hsa-mir-5009-5p ; hsa-mir-1269b ; hsa-mir-1269a ; hsa-mir-432-5p ; hsa-mir-20a-3p ; hsa-mir-3156-5p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6849-3p ; hsa-mir-1226-3p ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-3649 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-140-3p ; hsa-mir-764 ; hsa-mir-552-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-7114-3p ; hsa-mir-1180-5p ; hsa-mir-4679 ; hsa-mir-4677-3p

Nearest miRNA

hsa-mir-10397/Upstream/356866; hsa-mir-10523/Downstream/1001224;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/152207, chr5-CpG: 64/Downstream/118433

Upstream sequence

GCACAGTCGTGACCAGGATGTAGTAGGTGATGACGGCACACACCACCATGGTTACACCCAGGCAAAGGGCTCGTGTCTCTCCCCGCTTCTGGGCCATCAC

Downstream sequence

CAGCTTCTTCACCATATTCACTGGGGGCAGTGATCATTTCTAGGTCCACAGAAGCAAACAGAAGTGAGATCAGCCCAGTTCACAGGTGATCCACAGAAAG