Basic Information
VIS ID
TVIS44025491
Fusion event
HTLV-1-KCNIP1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
169877415/170450411 (Hg38)
End
169877415/170450411 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
KCNIP1
Nearest miRNA
hsa-mir-10397/Upstream/421845; hsa-mir-10523/Downstream/936245;
Nearest TSS
ENST00000502646/Upstream/60734; ENST00000434108/Downstream/35996;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/217186, chr5-CpG: 64/Downstream/53454
Upstream sequence
aaaatctgtgtctgcatacattttttcatccatcactcagccagggtctgcgggttggaccccgcaTCTACTCACAAATCAAGATGTTCAGTTCCGCCAC
Downstream sequence
ccacccctgtctgtcttcctttctcacagtcactctgtaggtgtatcctgaaaatgtaaatcagaccacagcattccctagctgaaaacccttccgtggc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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