Basic Information
VIS ID
TVIS44025493
Fusion event
HTLV-1-LOC107986476 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
171275740/171848736 (Hg38)
End
171275740/171848736 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LOC107986476
Nearest miRNA
hsa-mir-10397/Upstream/461976; hsa-mir-10523/Downstream/813429;
Nearest TSS
ENST00000502646/Upstream/62864; ENST00000398186/Downstream/19926;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/218400, chr5-CpG: 97/Downstream/157264
Nearby gene
FBXW11(-12816) ;
Upstream sequence
CAACCCCAAACCACTGTGGTCAGAGGCTGGCGGGAGCTCCTGCATGTGGGGGAGGAGCAGCAAGCCCATGTGCCCTCCAGAGCCAGGCAGGTAAGCCAGG
Downstream sequence
AGGGGCGCAAGGGACACCGCAGAGCACACACAGTGAGCCACAGCAAatgacaccggcctcagcactgggaaggtattagggagtggtggggactgcatcc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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