VISDB Viral Integration Site DataBase

VIS ID

TVIS44025497

Fusion event

HTLV-1-ERGIC1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.1

Reference genome

Start

End

172347133/172920130 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-106b-3p ; hsa-mir-92a-3p ; hsa-mir-138-1-3p ; hsa-mir-891a-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-3194-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-5693 ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-6796-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-3679-3p ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4701-5p ; hsa-mir-129-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-24-3p ; hsa-mir-4707-3p ; hsa-mir-6789-3p ; hsa-mir-149-5p ; hsa-mir-4258 ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-6765-3p ; hsa-mir-1228-3p ; hsa-mir-4438 ; hsa-mir-5698 ; hsa-mir-5001-3p ; hsa-mir-143-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-6741-3p ; hsa-mir-1237-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-676-5p ; hsa-mir-3613-3p ; hsa-mir-5700 ; hsa-mir-1249-5p ; hsa-mir-1253 ; hsa-mir-134-5p ; hsa-mir-151a-5p ; hsa-mir-151b ; hsa-mir-1827 ; hsa-mir-3118 ; hsa-mir-3125 ; hsa-mir-3150b-3p ; hsa-mir-3164 ; hsa-mir-3165 ; hsa-mir-3916 ; hsa-mir-3928-3p ; hsa-mir-4312 ; hsa-mir-4649-3p ; hsa-mir-4677-3p ; hsa-mir-4679 ; hsa-mir-4784 ; hsa-mir-5197-3p ; hsa-mir-5582-5p ; hsa-mir-6515-5p ; hsa-mir-6758-5p ; hsa-mir-6797-5p ; hsa-mir-6808-3p ; hsa-mir-6820-3p ; hsa-mir-6825-3p ; hsa-mir-6847-5p ; hsa-mir-6856-5p ; hsa-mir-6859-5p ; hsa-mir-6880-5p ; hsa-mir-7160-5p ; hsa-mir-758-3p ; hsa-mir-7847-3p ; hsa-mir-7973 ; hsa-mir-8071

Nearest miRNA

hsa-mir-10397/Upstream/4972; hsa-mir-12118/Downstream/383600;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/85462, chr5-CpG: 41/Downstream/38389

Nearest cancer related gene

ERGIC1(OG, No orient, 0)

Upstream sequence

cacaggcagcctagcaccagggccctggccctctgagctcactgcctgtggctgcttctcCCAACATCTTGGTTACACATGTCATGACCAGCTGTGTCTG

Downstream sequence

TGTGCCCCAGGTCACAGCCTAGGGCACCCTCTGCCCCATACTCCTGGAGGGAGTAGAGACCGTCCCCCACCCCAGCCCAGCCACTTTCCCTTTGAGGAAC