Basic Information
VIS ID
TVIS44025498
Fusion event
HTLV-1-LINC01863 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
173072678/173645675 (Hg38)
End
173072678/173645675 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
LINC01863
Nearest miRNA
hsa-mir-10397/Upstream/298139; hsa-mir-1229/Downstream/1106059;
Nearest TSS
ENST00000502646/Upstream/3156; ENST00000521373/Downstream/43784;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/28783, chr5-CpG: 23/Downstream/242253
Nearby gene
BOD1(-29012) ;
Upstream sequence
AGAATGTCTGGAATTCCCCAGACCCTGTGTTTGTAAAGCTCAAGGCTTTCTGGAAGCCTGACTCTGTGGCATGTGCTGACACAGAAGGGGCTGTCGCTGG
Downstream sequence
GGGCCCTGGGGGCTCTCTGCACCCAGGACTATGGTGCCCTGCCCTTCGTGAAGGGCCCTTGTCCAGTTTCCTCATATGTCTGGCTCATACTTGAGACAAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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