VISDB Viral Integration Site DataBase

VIS ID

TVIS44025524

Fusion event

HTLV-1-CDH6 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

p13.3

Reference genome

Start

End

31283036/31282929 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-7-1-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-3681-3p ; hsa-mir-194-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-302f ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-6748-5p ; hsa-mir-6819-5p ; hsa-mir-6737-5p ; hsa-mir-6812-5p ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-5196-5p ; hsa-mir-342-5p ; hsa-mir-4747-5p ; hsa-mir-4533 ; hsa-mir-1252-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-511-3p ; hsa-mir-3680-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-3185 ; hsa-mir-4511

Nearest miRNA

hsa-mir-10397/Upstream/14126937; hsa-mir-103a-1/Downstream/653173;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/88617, chr5-CpG: 42/Downstream/249074

Upstream sequence

CCTCCACATGACACAAGGTCTATTTCAGGGGTTATTAAATGTAACAAAAAACAAAAAATTGAATTGAGTAGGGTTATACTGAATCTCTGCAAATACAGAT

Downstream sequence

CCCTTATGGTATTATTTAAGTGTATTTTAAAAGTCACAAAGTACACATTGATAAGAAAgatggaaggatggatggatggatggatggatggaaggaAAAA