Basic Information
VIS ID
TVIS44025538
Fusion event
HTLV-1-LINC02107 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
38133577/38133475 (Hg38)
End
38133577/38133475 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
LINC02107
Nearest miRNA
hsa-mir-10397/Upstream/1985487; hsa-mir-103a-1/Downstream/424027;
Nearest TSS
ENST00000502646/Upstream/107778; ENST00000508853/Downstream/15005;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/292851, chr5-CpG: 104/Downstream/124307
Nearby gene
EGFLAM(+124934) ;
Upstream sequence
GTGAAgctccaaagagccccactcttggcagatgccctgttgttaccatgttaaaagtcttaataattttttttttttttttgagacggagttttgctct
Downstream sequence
tgttgcctaggctggggtacaatgctgcaatctcagcccactgcaacctgcaactcctgggttcaagtgattctcctgcctcagcctcctgagtagctgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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