VISDB Viral Integration Site DataBase

VIS ID

TVIS44025540

Fusion event

HTLV-1-LIFR integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

p13.1

Reference genome

Start

End

38507322/38507220 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-1-3p ; hsa-mir-101-3p ; hsa-mir-98-5p ; hsa-mir-27a-3p ; hsa-mir-21-5p ; hsa-mir-1296-5p ; hsa-mir-203a-3p ; hsa-mir-125a-5p ; hsa-mir-511-3p ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-526b-5p ; hsa-mir-331-5p ; hsa-mir-103a-2-5p ; hsa-mir-493-3p ; hsa-mir-4635 ; hsa-mir-5697 ; hsa-mir-4678 ; hsa-mir-3614-3p ; hsa-mir-499a-3p ; hsa-mir-3927-5p ; hsa-mir-451b ; hsa-mir-3120-3p ; hsa-mir-4785 ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-1252-3p ; hsa-mir-3692-3p ; hsa-mir-340-5p ; hsa-mir-5003-3p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-6083 ; hsa-mir-513a-5p ; hsa-mir-223-5p ; hsa-mir-26b-3p ; hsa-mir-4760-3p ; hsa-mir-27b-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-144-3p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-4804-5p ; hsa-mir-184 ; hsa-mir-4304 ; hsa-mir-8060 ; hsa-mir-125b-5p

Nearest miRNA

hsa-mir-10397/Upstream/2359232; hsa-mir-103a-1/Downstream/50282;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/248186, chr5-CpG: 151/Downstream/48900

Nearest cancer related gene

LIFR(TSG, No orient, 0)

Upstream sequence

CTTGGTAAAATTCTGCATCTCAGTATATACAAACTGACTGCGGCTCTTTTGTTGTTTTTCTCTTTATCAAAACTGCTCTCCCCAGCTTTAAGGCAGGACT

Downstream sequence

AGaaaaattaaaagaaattttttttttttttttaaGACGAGACCTTCAAAGTGATAAATGAGCccaggtgcagtggctcacatctgtaatcccagcactc