Basic Information
VIS ID
TVIS44025551
Fusion event
HTLV-1-LOC648987 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
43024467/43024365 (Hg38)
End
43024467/43024365 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC648987
Nearest miRNA
hsa-mir-10397/Upstream/4466804; hsa-mir-103a-1/Downstream/10927139;
Nearest TSS
ENST00000502646/Upstream/5882; ENST00000607830/Downstream/9351;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/5799, chr5-CpG: 22/Downstream/12792
Upstream sequence
ctcccaggctcaagtgatcctaccacctcagcctcctaagaagctgggactatagatgtgcaccaacacgcatggctaatttttgtattttttgtagaca
Downstream sequence
ccgtgtttcgccatgttgcccaggctggtctcaaactcctgagctcaagcagtctgcctgcctagaccgcccaaagtgctgagtttacaggtgcgagcca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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