Basic Information
VIS ID
TVIS44025560
Fusion event
HTLV-1-MFSD4BP1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
51875724/52579890 (Hg38)
End
51875724/52579890 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
MFSD4BP1
Nearest miRNA
hsa-mir-10397/Upstream/14022329; hsa-mir-103a-1/Downstream/1371614;
Nearest TSS
ENST00000502646/Upstream/570075; ENST00000506949/Downstream/208006;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1180372, chr5-CpG: 34/Downstream/208222
Nearby gene
PELO(+208050) ;
Upstream sequence
TTCCTCATAGTCATTTAGCCCAGACCTGGAGAGCAAAAGTATCTGGACCTCACTCTTTCTGTTTACTTTTCTCTGGTGATTAAGAGGTGAAGTGGCTAAT
Downstream sequence
TCATACATCCCAGGAAATAAAACACCAGTGGCTATCAATACGCCCAAACAGATGTATACAGAACTACAGGCAAATCAGGGTATTTTCTTTGGAAAAAATC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate