Basic Information
VIS ID
TVIS44025597
Fusion event
HTLV-1-LOC107986428 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
80194476/80898657 (Hg38)
End
80194476/80898657 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986428
Nearest miRNA
hsa-mir-10397/Upstream/8019994; hsa-mir-103a-1/Downstream/1941498;
Nearest TSS
ENST00000502646/Upstream/183452; ENST00000514946/Downstream/54323;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/243603, chr5-CpG: 136/Downstream/61476
Nearby gene
MSH3(+21842) ;
Upstream sequence
tttcccctcctccaggtcacgattgttatataccataaaggcagtatcaggaaactgattttggttattagtggtcccatattgcaatttttggagcttg
Downstream sequence
cacctgatgtccagagtggactggctgataaaatgctgtgccattagcacaatacccttgggagaggaagggtctaaatttgtatattttctgaaggcct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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