Basic Information
VIS ID
TVIS44025611
Fusion event
HTLV-1-ADGRV1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
90221689/90925872 (Hg38)
End
90221689/90925872 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADGRV1
miRNAs that regulate target gene
hsa-mir-296-3p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-10397/Upstream/909152; hsa-mir-103a-1/Downstream/2694824;
Nearest TSS
ENST00000502646/Upstream/26689; ENST00000639707/Downstream/3368;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/366733, chr5-CpG: 36/Downstream/354658
Upstream sequence
atagatagctcttattattttgaaatacgtcccgtcaatacctaatttattgagagtttttagcatgaagggttgttgaattttgtcaaaggctttttct
Downstream sequence
gcatctattgagataatcatgtggtttttgtcttgggctctgtttatatgctggattacatttattgatttgcgtatattgaaccagccttgcatcccag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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