Basic Information
VIS ID
TVIS44025613
Fusion event
HTLV-1-KIAA0825 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
93506968/94171263 (Hg38)
End
93506968/94171263 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5B
Target gene
KIAA0825
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10397/Upstream/550475; hsa-mir-103a-1/Downstream/1907875;
Nearest TSS
ENST00000502646/Upstream/59564; ENST00000508383/Downstream/305921;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/59532, chr5-CpG: 77/Downstream/446945
Upstream sequence
gattgaattatgggtgcaggtctttcctatgctgttctcatgatagtgaatgagtctcacacaaggtcagatggttttaaaaacaggaggttccctgtac
Downstream sequence
aagctcttcttttgcctgccgccatccttgtaagacgtgacttgctccttccaccatgattgtgaggcctccccagccttgtggaactgtaagtccatta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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