Basic Information
VIS ID
TVIS44025619
Fusion event
HTLV-1-GCNT2P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
10635023/10634790 (Hg38)
End
10635023/10634790 (Hg38)
Orient
-
Location type
Intronic
Target gene
GCNT2P1
Nearest miRNA
hsa-mir-3691/Upstream/194996; hsa-mir-10398/Downstream/5506766;
Nearest TSS
ENST00000381078/Upstream/49044; ENST00000379568/Downstream/52760;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/208385, chr6-CpG: 56/Downstream/59594
Nearby gene
GCNT2(+5422) ;
Upstream sequence
TTGAGTGTGGTTTCCTTTCTCAtttcttttttgttaattttttttttttttttgagataaagtctccctccatcacccaggctggagtgcagtggaatga
Downstream sequence
tctcagctcactgcaacctccgcctcccgggttcaagtgattcttctgcctcaccctcccaagtagctggcattcaagcgtgtgccatcacaccaggcta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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