VISDB Viral Integration Site DataBase

VIS ID

TVIS44025630

Fusion event

HTLV-1-MCM9 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr6

Cytoband

q22.31

Reference genome

Start

End

119253137/118931972 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-203a-3p ; hsa-mir-5579-3p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-888-5p ; hsa-mir-6750-3p ; hsa-mir-2909 ; hsa-mir-1296-5p ; hsa-mir-6781-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-5p ; hsa-mir-5693 ; hsa-mir-4512 ; hsa-mir-7160-3p ; hsa-mir-6895-5p ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-2467-3p ; hsa-mir-3160-3p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-3664-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6500-3p ; hsa-mir-6516-5p ; hsa-mir-6808-5p ; hsa-mir-6828-5p ; hsa-mir-6840-3p ; hsa-mir-6893-5p ; hsa-mir-935 ; hsa-mir-940

Nearest miRNA

hsa-mir-10398/Upstream/12147752; hsa-mir-1202/Downstream/137075;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/36679, chr6-CpG: 82/Downstream/2496

Nearest cancer related gene

MCM9(TSG, No orient, 0)

Upstream sequence

CTTAATGAAATCTGAATTATCTGTTACAGTCACAGTACATGTACTTCAAAAATGAGTGAAGTCAAATGTAAGTCAAAGAACTATGTTGGTACTGATTATC

Downstream sequence

AAAATCCAAAATAGTTCAAAGCATTTCCCATCTTTTCCCCAAATTTCCTTCATATTAACCCTGCATTAATATAcaggcatgcacctaacaacatttccgg