Basic Information
VIS ID
TVIS44025656
Fusion event
HTLV-1-PHACTR2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
143879844/143558707 (Hg38)
End
143879844/143558707 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
PHACTR2-AS1
Nearest miRNA
hsa-mir-10398/Upstream/2874824; hsa-mir-1202/Downstream/7543968;
Nearest TSS
ENST00000381078/Upstream/21862; ENST00000545919/Downstream/3324;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/21093, chr6-CpG: 59/Downstream/119260
Upstream sequence
TTGTCATTTTCTTTAGTAATATTCTGGGTAGAGAAAGGTAAGGAGTGTGTACCAATGACCTCTGTAGTGCTAAGATACATTCATGCGTTTTTCCAATGCG
Downstream sequence
AGGAGGTAGAGATCGTTTTACAAAGTCGAGCTCATGCTCTTTGTTTCCCAACTGGCCTTTGAGTACAGGTACGTTAGGATTTGTAGACCTCTGAGGAGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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