Basic Information
VIS ID
TVIS44025657
Fusion event
HTLV-1-LOC105374942 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p23
Reference genome
GRCh37/hg19
Start
14427812/14427581 (Hg38)
End
14427812/14427581 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6A
Target gene
LOC105374942
Nearest miRNA
hsa-mir-3691/Upstream/3987787; hsa-mir-10398/Downstream/1713975;
Nearest TSS
ENST00000381078/Upstream/33255; ENST00000474854/Downstream/172109;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/216068, chr6-CpG: 113/Downstream/817065
Nearby gene
LINC01108(No orient, 142127)
Upstream sequence
tgagtacttgcaacagagaccatgtggcctgcaaagcaaaaaaatatataaaataaaatatttctattggtcttttaccaaaaaaacagtttactgaccc
Downstream sequence
ctgATAAAGTTCAAGTTCATTCTTAAATTCAGCCTTGCTAATTAAATAGACCTGAAGTCTTGCTAAAATGCAAGGATTAGTTTTAGAGAATTATGATGTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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