Basic Information
VIS ID
TVIS44025666
Fusion event
HTLV-1-LOC105378066 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
153725214/153404079 (Hg38)
End
153725214/153404079 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378066
Nearest miRNA
hsa-mir-10398/Upstream/2301303; hsa-mir-1202/Downstream/1449281;
Nearest TSS
ENST00000381078/Upstream/95097; ENST00000523520/Downstream/606417;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/272422, chr6-CpG: 33/Downstream/635372
Upstream sequence
ACTTATTGTAAAAAGTGACCTTTAggctggacgcagtggctcatgcctgtaatcccaacactttgggaggctgaggcaggcggatcacaaggtcaggaga
Downstream sequence
tcgagacagtcttggccaacatggtgaaaccccgactctactaaaaatacaaaaaattagccaggcatggtggcacgtgcctgtaatcccagctacttgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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