Basic Information
VIS ID
TVIS44025682
Fusion event
HTLV-1-LOC107986546 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
GRCh37/hg19
Start
167922876/167510684 (Hg38)
End
167922876/167510684 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986546
Nearest miRNA
hsa-mir-10398/Upstream/512772; hsa-mir-4644/Downstream/2820077;
Nearest TSS
ENST00000381078/Upstream/126174; ENST00000597278/Downstream/168586;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/42173, chr6-CpG: 14/Downstream/41418
Nearby gene
TCP10(-124878) ;
Upstream sequence
ACACTAATTGTAGCAAAAGTGCATCTGTGTCTCTTTTGGTAAGCCTTTGGTTTGTAACATGATAGAATCACTTGAAGCAAAATACTGCAGGGAAGGGAAA
Downstream sequence
GCGCTCACTAACAAAGGTTCCCTCCCAGGCAGCACTTTGTCCTCCTAGCAGAGGCATCCTCCACAGGAGGTCCTGCTTCCCACCAGGGCCCCTCCCCTCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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