Basic Information
VIS ID
TVIS44025715
Fusion event
HTLV-1-LOC100507336 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
3712553/3712319 (Hg38)
End
3712553/3712319 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100507336
Nearest miRNA
hsa-mir-4645/Upstream/858212; hsa-mir-10398/Downstream/1435914;
Nearest TSS
ENST00000381078/Upstream/87572; ENST00000603791/Downstream/26575;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/254590, chr6-CpG: 233/Downstream/38235
Nearby gene
PXDC1(No orient, 10283)
Upstream sequence
gcagtgagctgtgatggcaccactgtactccagcctgggccacagaaagacactgtctcttaaaaaaaaaTTGTGAAAACATAACTTTGTAGAGATGCTC
Downstream sequence
CAGTCAATTCATCTCCAAAACTGGCTTCTAGCTCACTGTGATAGAGCCAGCCACACAGAATGGGTGGTGTGGGTTCTGAGATCTCtgtgtgtgtgtgtgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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