Basic Information
VIS ID
TVIS44025722
Fusion event
HTLV-1-LOC101929555 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
40861989/40894250 (Hg38)
End
40861989/40894250 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA6H
Target gene
LOC101929555
Nearest miRNA
hsa-mir-1236/Upstream/1819869; hsa-mir-10398/Downstream/704473;
Nearest TSS
ENST00000381078/Upstream/178887; ENST00000470917/Downstream/138737;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/294409, chr6-CpG: 39/Downstream/133813
Upstream sequence
CTGAGGCGGTTTACAGCTGTTTACTAGCAGTCAGATAGAGGAGGAACTTAAGTGGAATATAAACTATTGAATTAAATTATCCTCTTCAAATGCCACCTGG
Downstream sequence
TACTCACTCTACCTGAGAATTTCAATCAATGCTGGTAACTTCCTGCTCTCTAATGGAATGCACCAGACAAGTTTTTTTGCCTGCCATTTGAGCTGGGCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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