Basic Information
VIS ID
TVIS44025726
Fusion event
HTLV-1-PRPH2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
42675588/42707850 (Hg38)
End
42675588/42707850 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
PRPH2
Nearest miRNA
hsa-mir-10398/Upstream/974240; hsa-mir-10524/Downstream/726692;
Nearest TSS
ENST00000381078/Upstream/143788; ENST00000614467/Downstream/14724;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/143296, chr6-CpG: 71/Downstream/19277
Upstream sequence
GGTGGCCTGGGTCATGGCAACCATGTTTCCACACGCCCTGTAATCCCTGCCCTCTACTTCGTGGGCAGAACACACTGCCCAGAGACCACATGGCCCTggg
Downstream sequence
tggcatgggcagcacagatcggtgacaagagccggacagcctgggtttactcctggctcgcccacatgccagctccatccctctggacaagttccttaac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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