Basic Information
VIS ID
TVIS44025727
Fusion event
HTLV-1-CNPY3-GNMT integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
42922319/42954581 (Hg38)
End
42922319/42954581 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
CNPY3-GNMT
Nearest miRNA
hsa-mir-10398/Upstream/1220971; hsa-mir-10524/Downstream/479961;
Nearest TSS
ENST00000381078/Upstream/10841; ENST00000372808/Downstream/6177;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/24708, chr6-CpG: 57/Downstream/5899
Nearby gene
GNMT(+6181) ;
Upstream sequence
atgttcttagctcccacaatgtagcctaaatatttgccctggcatgcttatactggtccaaacaaacattaggtcatagcctgttcctcatccttatttg
Downstream sequence
aaggtgtttttacctttctcagcattccacaagttacttccccttcctttgttctcctctgcctttgcctcttttaaaagttctaagttgctagccaatc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate