Basic Information
VIS ID
TVIS44025743
Fusion event
HTLV-1-LYRM4-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
5174026/5173792 (Hg38)
End
5174026/5173792 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA6B
Target gene
LYRM4-AS1
Nearest miRNA
hsa-mir-3691/Upstream/25470; hsa-mir-10398/Downstream/995512;
Nearest TSS
ENST00000381078/Upstream/40898; ENST00000602691/Downstream/42946;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/38231, chr6-CpG: 105/Downstream/86705
Upstream sequence
ATATGCTAATCACCTTTCATAAAACAGTCCATTGCTCTGAGTGTACGGCTCATGTTTAAATATGTATGCAGAAGAGAAATCCATTTGATAAAAAGATATG
Downstream sequence
TCCTGAATTAATGCGGTGGGTTTTAAAATATAGCCGTAACCTGCTTTAAGGCAGGTTAGACATAGAGTTGCTTTCAATAGGAAGCTGTGCTGGAGACAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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