Basic Information
VIS ID
TVIS44025745
Fusion event
HTLV-1-FARS2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
5464305/5464072 (Hg38)
End
5464305/5464072 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6B
Target gene
FARS2
Nearest miRNA
hsa-mir-3691/Upstream/315750; hsa-mir-10398/Downstream/705232;
Nearest TSS
ENST00000381078/Upstream/5997; ENST00000454882/Downstream/231200;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/202370, chr6-CpG: 29/Downstream/387305
Upstream sequence
GGTTTCATAAGGGGTTGTTCTAGTGTCGGGATTCATGGCAGGTGCTGTGGAGTAAACCACGATTCAACCTCTGGACTTAAGTATGTACATTTGGTTGCAC
Downstream sequence
TTCTCCATCTTATTTTTTTATTAACCAGtttattcatttctaagcagcatttattgaacacctgctgtgtgctgtttcctagaaatgcaaaggaaagtta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate