Basic Information
VIS ID
TVIS44025762
Fusion event
HTLV-1-LOC105377841 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
66849196/66139303 (Hg38)
End
66849196/66139303 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377841
Nearest miRNA
hsa-mir-10398/Upstream/8749091; hsa-mir-10524/Downstream/5237657;
Nearest TSS
ENST00000381078/Upstream/432078; ENST00000449928/Downstream/1750036;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/44365, chr6-CpG: 37/Downstream/2495537
Nearby gene
SLC25A51P1(No orient, 349820)
Upstream sequence
tccagagggagtgttaaattgctcttctagctctgccatccatggacggcttaagtgttaccagctctgtgggccctctgccttttcacatgaggtggct
Downstream sequence
gccttctgctagtgagggcaaagggcaagtgtgacagccttttgtatccacacatgtggcacctgagctcttgtctggcattcaggagaaattaggtcgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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