Basic Information
VIS ID
TVIS44025788
Fusion event
HTLV-1-LOC105377876 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83348211/82638494 (Hg38)
End
83348211/82638494 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377876
Nearest miRNA
hsa-mir-10398/Upstream/4099185; hsa-mir-1202/Downstream/7674248;
Nearest TSS
ENST00000381078/Upstream/274250; ENST00000451856/Downstream/255539;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/272892, chr6-CpG: 39/Downstream/427161
Nearby gene
UBE3D(No orient, 253906)
Upstream sequence
aaatgttctaaaattagattatggtgacggttttataactctgtaaatacactaaaaatcactgaattttatactttaaatgcatgaacttaatgatatg
Downstream sequence
taaattatttcaataaagctttaaaaaaaaacgaggattttgaattaatccaatcagacaaagacagagaaaaaagaattttcaaaaatgaacaaaacct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate