Basic Information
VIS ID
TVIS44025792
Fusion event
HTLV-1-LOC107986622 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
86439291/85729573 (Hg38)
End
86439291/85729573 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986622
Nearest miRNA
hsa-mir-10398/Upstream/7190264; hsa-mir-1202/Downstream/4583169;
Nearest TSS
ENST00000381078/Upstream/85781; ENST00000305344/Downstream/1207733;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/50133, chr6-CpG: 43/Downstream/1207962
Nearby gene
SNHG5(-50840) ;
Upstream sequence
aatttagaataatggcctccaattccatccaggttgctgtgaatgccattatttcattcttttttatggctgagtagtattccatggtgtgtgtgtgtgt
Downstream sequence
gtgtgtgtgtgtgtgtgtgtgtatatatatatatatataaccacattttctttacagactcgttgcttgacggacatttgaattggtttcatatttttgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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