Basic Information
VIS ID
TVIS44025798
Fusion event
HTLV-1-LOC107986623 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q15
Reference genome
GRCh37/hg19
Start
91617460/90907742 (Hg38)
End
91617460/90907742 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6G
Target gene
LOC107986623
Nearest miRNA
hsa-mir-10398/Upstream/594909; hsa-mir-1202/Downstream/613918;
Nearest TSS
ENST00000381078/Upstream/320697; ENST00000452624/Downstream/485258;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/296242, chr6-CpG: 92/Downstream/2508812
Nearby gene
MAP3K7(-320440) ;
Upstream sequence
aggagtcaccttcactgctgcaagctgcactgcctggggttggaggagggatggcacaagcactccttcagccctcaagctggtgtctccctaggtcatg
Downstream sequence
tgccaccgtagtcctgtggctctgagcctgacccagcactaggagttgcctaggaattgcaatctctgtgtcctagactgcctttccgtttacctaggac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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