Basic Information
VIS ID
TVIS44025802
Fusion event
HTLV-1-UFL1-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
96900737/96452861 (Hg38)
End
96900737/96452861 (Hg38)
Orient
+
Location type
Intronic
Target gene
UFL1-AS1
Nearest miRNA
hsa-mir-10398/Upstream/4931124; hsa-mir-1202/Downstream/1571670;
Nearest TSS
ENST00000381078/Upstream/436877; ENST00000461673/Downstream/68734;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/436601, chr6-CpG: 61/Downstream/68774
Nearby gene
UFL1(+68965) ;
Upstream sequence
ACTGTCTCTGTTCCAGAGATGTACAAATGACAGGAAAATAATATTAAAAGAAGAAAATTAAACAACTTAACAGTTAAACATTATGATGGTCTAGAAATGG
Downstream sequence
ACAGAAAAGCACAATGATCAATGGAGACTGAATGTACAGAATGGCTAGGCTTTGCAGCAGAAGTTGACAGTGGGAACAAAGGAAACTAGAAGACCACCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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