Basic Information
VIS ID
TVIS44025808
Fusion event
HTLV-1-COL26A1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
101123313/101480032 (Hg38)
End
101123313/101480032 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
COL26A1
Nearest miRNA
hsa-mir-10525/Upstream/320477; hsa-mir-10399/Downstream/813071;
Nearest TSS
ENST00000635602/Upstream/117155; ENST00000613091/Downstream/73171;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/115870, chr7-CpG: 31/Downstream/208330
Upstream sequence
tgaaatctataataaattattgttaactataatttctctactgtactattgaatactaaaacaattttttttaagagtcagggtctcactagtttttcca
Downstream sequence
gactgttcttgaactcctgggctcaagcagtccttccacctcagccttctaagcagctgggatttagaacttattccttctatctagctgtatgttttta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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