Basic Information
VIS ID
TVIS44025811
Fusion event
HTLV-1-DPY19L2P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
102896126/103255679 (Hg38)
End
102896126/103255679 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7F
Target gene
DPY19L2P2
Nearest miRNA
hsa-mir-10525/Upstream/784148; hsa-mir-10399/Downstream/11397666;
Nearest TSS
ENST00000635602/Upstream/106119; ENST00000498530/Downstream/41743;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/106006, chr7-CpG: 100/Downstream/24183
Upstream sequence
caaaggttatttcactttaactggctggagccaaggtctgaaagctggccttctgattccccctgcctctctgatcgctcctttcagtcagttctagtaa
Downstream sequence
ctcctcttgttttatgtaccactctttaatattggaccaccttaggctctgtcatatgcccccttcatttctccatctgcacatcctccataagcaaatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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