Basic Information
VIS ID
TVIS44025819
Fusion event
HTLV-1-TFEC integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
115794957/116154903 (Hg38)
End
115794957/116154903 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7G
Target gene
TFEC
miRNAs that regulate target gene
hsa-mir-374a-5p ; hsa-mir-5096 ; hsa-mir-335-3p ; hsa-mir-769-5p ; hsa-mir-873-5p ; hsa-mir-506-5p
Nearest miRNA
hsa-mir-10525/Upstream/1501448; hsa-mir-10399/Downstream/865308;
Nearest TSS
ENST00000635602/Upstream/124090; ENST00000461440/Downstream/4992;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1232128, chr7-CpG: 71/Downstream/55413
Nearby gene
TES(+55590) ;
Upstream sequence
gcaagattagagggtagtaggaggggagaaatcgcggatcttcctctcttggatattaattctctctttgttttgtggtggtatctctgaaagggactgg
Downstream sequence
aaacctttcacaggggtctcagccttggccctggtttttcctcttctgccatactatcccttgccaaattttcctctttggtggttctagcccctgctat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate