VISDB Viral Integration Site DataBase

VIS ID

TVIS44025845

Fusion event

HTLV-1-TMEM178B integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q34

Reference genome

Start

End

140970019/141270219 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-606 ; hsa-mir-8485 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-508-5p ; hsa-mir-432-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-494-3p ; hsa-mir-20b-3p ; hsa-mir-3137 ; hsa-mir-22-3p ; hsa-mir-574-3p ; hsa-mir-1277-5p ; hsa-mir-6083 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-656-3p ; hsa-mir-5011-5p ; hsa-mir-6867-3p ; hsa-mir-7111-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4268 ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6787-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-3922-5p ; hsa-mir-541-3p ; hsa-mir-15a-3p ; hsa-mir-4432 ; hsa-mir-4717-5p ; hsa-mir-4803 ; hsa-mir-499a-5p ; hsa-mir-5684 ; hsa-mir-5704 ; hsa-mir-645 ; hsa-mir-8087 ; hsa-mir-298 ; hsa-mir-3158-5p

Nearest miRNA

hsa-mir-10399/Upstream/2226062; hsa-mir-11400/Downstream/1204308;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/195459, chr7-CpG: 59/Downstream/280994

Upstream sequence

AAAAGAATTGTATGGTTTTGGAAGAATATAGTAGCAGAAGTAAAGACCTTTGAGGGAGCACCCTGTTCAAAGCTCTGATTTTTGTATGGTCAGTACACAG

Downstream sequence

CTCTGGGGAGCACCTGGTTCAAGCCCAGACACTCAGGTGGGTACAGACAGTCTACAGCTTTGGGGAGCACCTGGGTCAGGCCCGGAAGCTCAGGTGAGCA