Basic Information
VIS ID
TVIS44025862
Fusion event
HTLV-1-ATG9B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150716483/151019396 (Hg38)
End
150716483/151019396 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
ATG9B
Nearest miRNA
hsa-mir-10399/Upstream/3641275; hsa-mir-153-2/Downstream/219025;
Nearest TSS
ENST00000635602/Upstream/595; ENST00000472698/Downstream/4120;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/79, chr7-CpG: 58/Downstream/8690
Upstream sequence
CACGCACAGGCCCCCGCTCCGCTGCAGTGCCAAGAGGCGGGACTGCACCTCTGCCCAGGGAACCGAGCTCAGCTCCTCCTGAAAGGGGCACTGATGAGAG
Downstream sequence
CCAGCGACCCCCCATTCCTCTCCACAGTGATGCTCAAGCTCCACACCCCTAAGTGTGCGGCCTGAAAACCCGCAAACTGAGTTTGCGATCACAAACTCGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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