VISDB Viral Integration Site DataBase

VIS ID

TVIS44025863

Fusion event

HTLV-1-ABCF2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q36.1

Reference genome

Start

End

150914212/151217126 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-32-5p ; hsa-mir-532-3p ; hsa-mir-193b-3p ; hsa-mir-326 ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-218-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-122-5p ; hsa-mir-6081 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-107 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-16-1-3p ; hsa-mir-4433a-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-25-3p ; hsa-mir-4280 ; hsa-mir-4433b-3p ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-3908 ; hsa-mir-5010-3p ; hsa-mir-4743-3p ; hsa-mir-592 ; hsa-mir-6888-3p ; hsa-mir-584-5p ; hsa-mir-4669 ; hsa-mir-3657 ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-550b-3p ; hsa-mir-3120-5p ; hsa-mir-486-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p

Nearest miRNA

hsa-mir-10399/Upstream/3839005; hsa-mir-153-2/Downstream/21295;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/12234, chr7-CpG: 60/Downstream/9668

Upstream sequence

aataatcacgaatgtggctggtttgctgactgcatttgtatggttatcataaactttatgaatttttcttttacaatattttatattcattcattctatc

Downstream sequence

attttccaacctgcttattcaagtttaggatcatgggcagctggagcccatcccacaacccagggaacaagacaagaaccagccctgaagaggacaccat