Basic Information
VIS ID
TVIS44025868
Fusion event
HTLV-1-LOC101927914 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
157286451/157493757 (Hg38)
End
157286451/157493757 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7I
Target gene
LOC101927914
Nearest miRNA
hsa-mir-10399/Upstream/6060118; hsa-mir-153-2/Downstream/80579;
Nearest TSS
ENST00000635602/Upstream/27526; ENST00000449903/Downstream/7565;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/9895, chr7-CpG: 56/Downstream/7004
Upstream sequence
CTTAGTGGGAAAGAGCCCAGGGAAGCTTTCTGCCTCTGAAAAAAAAAATAGAATTATAGACTGTTCTAGAACAAGGCATTTATGCCAGAATTccatctca
Downstream sequence
gtgacattgtcattcacagagttgcttgagcccaaatattaagaatcatccttgactcctctcctttcttccctctcccacatccaaaccacacctttgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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