Basic Information
VIS ID
TVIS44025879
Fusion event
HTLV-1-LOC107986777 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
24251999/24212380 (Hg38)
End
24251999/24212380 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986777
Nearest miRNA
hsa-mir-1183/Upstream/2741234; hsa-mir-10399/Downstream/1737539;
Nearest TSS
ENST00000635602/Upstream/315045; ENST00000407573/Downstream/43339;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/531322, chr7-CpG: 123/Downstream/71559
Nearby gene
NPY(+71808) ;
Upstream sequence
ACCCTAGTTGTGTTATACTAAGCGGATGCACATATGTGTTGCTAGTGAAATTAACAAGGGACTTCAATCTTGGGGCTCAATTCTAATACTCAAAACCCAT
Downstream sequence
GCTAAGTAGAATGGTTGATACAATAATATTTATTTTTTTGGAGTGTTATCTGAAAGCAAAATGATAATACTTTTGGAAAAATTGTAGAAATCCAAGAGTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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