Basic Information
VIS ID
TVIS44025881
Fusion event
HTLV-1-LOC107986758 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
2531206/2491572 (Hg38)
End
2531206/2491572 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7B
Target gene
LOC107986758
Nearest miRNA
hsa-mir-339/Upstream/233995; hsa-mir-10399/Downstream/35502;
Nearest TSS
ENST00000635602/Upstream/14678; ENST00000493850/Downstream/20957;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/31080, chr7-CpG: 192/Downstream/27165
Nearby gene
GRIFIN(-15189) ;
Upstream sequence
catccatccatccatccatccatccatccattcacccatccacccatctatccacttattcatccatccatctacccacccacctacccatcctcccatc
Downstream sequence
catacaccaactcatccatgcacacatccatccatccatccattcttctacccatccctatccacccattcatctatctattcattcatccatccatcca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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