Basic Information
VIS ID
TVIS44025917
Fusion event
HTLV-1-ABCA13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48253361/48213764 (Hg38)
End
48253361/48213764 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCA13
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3331964; hsa-mir-10399/Downstream/8742021;
Nearest TSS
ENST00000635602/Upstream/42304; ENST00000484268/Downstream/65512;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/123400, chr7-CpG: 37/Downstream/241000
Upstream sequence
atttacttacagtgggacttctttcaaaatgagagtcaatcttctcaaactctgtcactgacttaccaactaactttatgtaatattctaaatcctttgt
Downstream sequence
tatcatttcagtaatgttcacagcatcttcaccagaagtagattccatctcaagaaaccactttgcttgcttatccataagaagcaactcctcattcatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate