VISDB Viral Integration Site DataBase

VIS ID

TVIS44025934

Fusion event

HTLV-1-ZNF107 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q11.21

Reference genome

Start

End

64129919/64669541 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-2054 ; hsa-mir-4799-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-4509 ; hsa-mir-4262 ; hsa-mir-4744 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-1225-5p ; hsa-mir-6881-3p ; hsa-mir-548aw ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4671-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6080 ; hsa-mir-4698 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4506 ; hsa-mir-3149 ; hsa-mir-629-3p ; hsa-mir-297 ; hsa-mir-675-3p ; hsa-mir-183-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-4724-3p ; hsa-mir-3119 ; hsa-mir-627-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-3674 ; hsa-mir-889-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-4703-3p ; hsa-mir-6845-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-6741-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7977 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-3178 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-383-3p ; hsa-mir-3692-3p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-4303 ; hsa-mir-502-5p ; hsa-mir-4468 ; hsa-mir-643 ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-3200-5p ; hsa-mir-5197-5p ; hsa-mir-208a-3p ; hsa-mir-208b-3p ; hsa-mir-3667-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4767 ; hsa-mir-4768-3p ; hsa-mir-499a-5p ; hsa-mir-548ao-3p ; hsa-mir-6087 ; hsa-mir-6502-3p ; hsa-mir-6888-5p

Nearest miRNA

hsa-mir-1183/Upstream/1048372; hsa-mir-10399/Downstream/9523;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/2925, chr7-CpG: 26/Downstream/124781

Upstream sequence

TGAAAGAAATAAATACTTTGCATTTCTTACTGAGGTATGAAATGTAAGCACCTTAAAATTTCCTTCCCTTggttgggtgcagtggctcacgcctgtaatc

Downstream sequence

ccagcactttgggaggctgaggcaggcggatcacctgaggtcaagagttcaagaccagcctggccaacatggtgaagccccgtctctactgaaaaattag