VISDB Viral Integration Site DataBase

VIS ID

TVIS44025950

Fusion event

HTLV-1-CASTOR2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q11.23

Reference genome

Start

End

74432356/75018188 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6734-5p ; hsa-mir-1226-5p ; hsa-mir-6834-5p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4721 ; hsa-mir-3616-3p ; hsa-mir-676-5p ; hsa-mir-3065-5p ; hsa-mir-7160-3p ; hsa-mir-100-3p ; hsa-mir-4642 ; hsa-mir-5093 ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-580-5p ; hsa-mir-191-5p ; hsa-mir-1271-5p ; hsa-mir-96-5p ; hsa-mir-182-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4755-3p ; hsa-mir-1233-3p ; hsa-mir-1236-3p ; hsa-mir-877-3p ; hsa-mir-4258 ; hsa-mir-6840-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4687-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-214-5p ; hsa-mir-766-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-3613-3p ; hsa-mir-4523 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-1303 ; hsa-mir-6866-5p ; hsa-mir-877-5p ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-7158-5p ; hsa-mir-4680-5p ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-6873-5p ; hsa-mir-3692-3p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-3976 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1180-3p ; hsa-mir-1249-5p ; hsa-mir-125a-3p ; hsa-mir-1275 ; hsa-mir-138-5p ; hsa-mir-2117 ; hsa-mir-28-5p ; hsa-mir-296-3p ; hsa-mir-3139 ; hsa-mir-3191-5p ; hsa-mir-326 ; hsa-mir-330-5p ; hsa-mir-3907 ; hsa-mir-4270 ; hsa-mir-431-3p ; hsa-mir-4441 ; hsa-mir-4443 ; hsa-mir-4447 ; hsa-mir-4458 ; hsa-mir-4472 ; hsa-mir-4487 ; hsa-mir-4497 ; hsa-mir-4500 ; hsa-mir-4525 ; hsa-mir-4537 ; hsa-mir-4664-3p ; hsa-mir-4665-5p ; hsa-mir-4685-5p ; hsa-mir-4710 ; hsa-mir-4723-5p ; hsa-mir-5010-5p ; hsa-mir-518c-5p ; hsa-mir-548q ; hsa-mir-5584-5p ; hsa-mir-5698 ; hsa-mir-6077 ; hsa-mir-625-5p ; hsa-mir-6515-5p ; hsa-mir-6730-5p ; hsa-mir-6731-5p ; hsa-mir-6732-5p ; hsa-mir-6754-5p ; hsa-mir-6760-5p ; hsa-mir-6764-3p ; hsa-mir-6784-5p ; hsa-mir-6797-5p ; hsa-mir-6799-5p ; hsa-mir-6804-5p ; hsa-mir-6824-3p ; hsa-mir-6825-5p ; hsa-mir-6837-5p ; hsa-mir-6870-5p ; hsa-mir-708-5p ; hsa-mir-7111-5p ; hsa-mir-7113-5p ; hsa-mir-8085 ; hsa-mir-9500 ; hsa-mir-98-5p ; hsa-mir-1827 ; hsa-mir-204-3p ; hsa-mir-2467-3p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4646-5p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4747-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-490-3p ; hsa-mir-5196-5p ; hsa-mir-6086 ; hsa-mir-6500-3p ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6828-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7851-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-10525/Upstream/422162; hsa-mir-10399/Downstream/897009;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/52634, chr7-CpG: 55/Downstream/55329

Nearby gene

RCC1L(-8868) ;

Upstream sequence

GGCATCACCAATGGCTTCGTGAAGCCCAAGCTGGGTGAGCTGGGGGCGGGGGTTTGTGCAGGGGAAACCTCACGAAGTTACCAGGCCCAGCCGCAGACCA

Downstream sequence

GCCTTACTCTCAGCACGGGCTTCTGCCCACTGAGCATGAATGGAGTGCCAGGCAGAACGGGATGCAAAGggcccagtgtggtggctcatgcttgtaatcc