VISDB Viral Integration Site DataBase

VIS ID

TVIS44025952

Fusion event

HTLV-1-HIP1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q11.23

Reference genome

Start

End

75355438/75726120 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4999-3p ; hsa-mir-1273e ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-636 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6852-5p ; hsa-mir-6742-3p ; hsa-mir-939-3p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-5089-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-138-2-3p ; hsa-mir-4674 ; hsa-mir-4437 ; hsa-mir-760 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-6836-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-210-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6752-3p ; hsa-mir-7108-3p ; hsa-mir-6801-3p ; hsa-mir-6810-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-640 ; hsa-mir-5589-5p ; hsa-mir-4731-5p

Nearest miRNA

hsa-mir-10525/Upstream/1130094; hsa-mir-10399/Downstream/189077;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/86487, chr7-CpG: 106/Downstream/12624

Upstream sequence

tttagctgagacgcggttttaccatgttgaccaggctggtctggaactcctgacctcaaatgatctgcctgccttgttatcacaaactgctaggattgca

Downstream sequence

ggcgtgagccaccgcgcccagctgtgcttgcatttctgttggatatataactagcagtggtatggctaaattactgaggatgcctgtctttagttttagc